- Featurama0.7 starts by either processing a config file if one was specified
or asking the user to set a series of paramaters.
- After the parameters have been set Featurama0.7 begins searching for
features by first processing the input FASTA file and then applying the
algorithm shown on this
flow chart with the specifed
- As the parameter search is happening Featurama0.7 verifies that every
feature it chooses is unique among all the features it has chosen. If a
feature found at one stage in the search is found to contain a duplicate,
the feature is deleted from the gene for which it was found, and the gene
is searched for another feature as long as the search parameters permit.